Research Projects

Bioinformatic Data Analysis Pipeline Development and Refining

🌱 Amplicon Metagenomic Sequencing

• QIIME2 Pipeline

🌴 Shotgun Metagenomic Sequencing

• Reference-based Metagenomic Pipeline
• De novo Metagenomic Pipeline

🌵 Metatranscriptomics

• Reference-based Metatranscriptomic Pipeline
• De novo Metatranscriptomic Pipeline

🌻 RNA Sequencing

• Bulk RNA-seq Pipeline
• Single Cell RNA-seq (scRNA-seq) Pipeline
• Single nuclei RNA sequencing (snRNA-seq) Pipeline

🌿 Metabolomics

Research Projects

1. Gut microbiome in Animal Health
   • Identification of feed efficiency-associated gut microbes
   • Identification of growth rate-associated gut microbes
   • Chicken intestinal mycobiome profiling
2. Gut microbiome in Animal Disease
   • Identification of disease severity-associated microbes
   • Perturbations of mycobiota under disease condition
   • Impact of prebiotics and microbiota-derived metabolites on disease mitigation
   • Dynamic change of the gut microbiome in response to disease
3. Gut microbiome and host interaction in human health and disease
   • Amino acid sensing in the gut and its mediation in gut-brain signal transduction
   • Curcumin Mitigates Alzheimer’s-related symptoms
   • Curcumin Alleviate Metabolic Dysfunction in Diet-Induced Obesity and Aging(Accepted)